JILA Science Publications
Displaying 1 - 77 of 77
2024
Influence of Fluorescence Lifetime Selections and Conformational Flexibility on Brightness of FusionRed Variants
Srijit Mukherjee, Nancy Douglas, Ralph Jimenez, The Journal of Physical Chemistry Letters 15, 1644-1651 (2024).
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Srijit Mukherjee, Nancy Douglas, Ralph Jimenez, The Journal of Physical Chemistry Letters 15, 1644-1651 (2024).
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Excited State Vibrational Dynamics Reveals a Photocycle That Enhances the Photostability of the TagRFP-T Fluorescent Protein
Atsushi Yabushita, Chia-Yun Cheng, Ying Ko, Takayoshi Kobayashi, Izumi Iwakura, Ralph Jimenez, The Journal of Physical Chemistry B , (2024).
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Atsushi Yabushita, Chia-Yun Cheng, Ying Ko, Takayoshi Kobayashi, Izumi Iwakura, Ralph Jimenez, The Journal of Physical Chemistry B , (2024).
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A Liquid-Core Fiber Platform for Classical and Entangled Two-Photon Absorption Measurements
Kristen Parzuchowski, Michael Mazurek, Charles Camp Jr., Martin Stevens, Ralph Jimenez, Submitted , (2024).
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Kristen Parzuchowski, Michael Mazurek, Charles Camp Jr., Martin Stevens, Ralph Jimenez, Submitted , (2024).
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2023
Backbone 1H, 15N and 13C resonance assignments of the 27kDa fluorescent protein mCherry
Marco Sette, Laura Johnson, Ralph Jimenez, Frans Mulder, Biomolecular NMR Assignments 17, 243-247 (2023).
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Marco Sette, Laura Johnson, Ralph Jimenez, Frans Mulder, Biomolecular NMR Assignments 17, 243-247 (2023).
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2022
Conformational dynamics of mCherry variants: a link between sidechain motions and fluorescence brightness
Srijit Mukherjee, Premashis Manna, Nancy Douglas, Prem Chapagain, Ralph Jimenez, The Journal of Physical Chemistry B 127, 52–61 (2022).
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Srijit Mukherjee, Premashis Manna, Nancy Douglas, Prem Chapagain, Ralph Jimenez, The Journal of Physical Chemistry B 127, 52–61 (2022).
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Characterizing dark state kinetics and single molecule fluorescence of FusionRed and FusionRed-MQ at low irradiances
Srijit Mukherjee, Connor Thomas, Ryan Wilson, Emma Simmerman, Sheng-Ting Hung, Ralph Jimenez, Physical Chemistry Chemical Physics 24, 14310-14323 (2022).
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Srijit Mukherjee, Connor Thomas, Ryan Wilson, Emma Simmerman, Sheng-Ting Hung, Ralph Jimenez, Physical Chemistry Chemical Physics 24, 14310-14323 (2022).
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Directed Evolution of a Bright Variant of mCherry: Suppression of Nonradiative Decay by Fluorescence Lifetime Selections
Srijit Mukherjee, The Journal of Physical Chemistry B 126, 4659-4668 (2022).
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Srijit Mukherjee, The Journal of Physical Chemistry B 126, 4659-4668 (2022).
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Temperature-Dependent Fluorescence of mPlum Fluorescent Protein from 295 to 20 K
Taecheon Lyu, So Sohn, Ralph Jimenez, Taiha Joo, The Journal of Physical Chemistry B , (2022).
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Taecheon Lyu, So Sohn, Ralph Jimenez, Taiha Joo, The Journal of Physical Chemistry B , (2022).
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Hot-Band Absorption Can Mimic Entangled Two-Photon Absorption
Alexander Mikhaylov, Ryan Wilson, Kristen Parzuchowski, Michael Mazurek, Charles Camp, Martin Stevens, Ralph Jimenez, The Journal of Physical Chemistry Letters 13, 1489-1493 (2022).
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Alexander Mikhaylov, Ryan Wilson, Kristen Parzuchowski, Michael Mazurek, Charles Camp, Martin Stevens, Ralph Jimenez, The Journal of Physical Chemistry Letters 13, 1489-1493 (2022).
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Characterizing Dark State Kinetics and Single Molecule Fluorescence of FusionRed and FusionRed-MQ at Low Irradiances
Srijit Mukherjee, Connor Thomas, Ryan Wilson, Emma Simmerman, ShengTing Hung, Ralph Jimenez, Chem Archive , (2022).
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Srijit Mukherjee, Connor Thomas, Ryan Wilson, Emma Simmerman, ShengTing Hung, Ralph Jimenez, Chem Archive , (2022).
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Photophysical Engineering of Fluorescent Proteins: Accomplishments and Challenges of Physical Chemistry Strategies
Srijit Mukherjee, Ralph Jimenez, The Journal of Physical Chemistry B , (2022).
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Srijit Mukherjee, Ralph Jimenez, The Journal of Physical Chemistry B , (2022).
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2021
Photo-Switching of Protein Dynamical Collectivity
Mengyang Xu, Deepu George, Ralph Jimenez, Andrea Markelz, Photonics 8, 302 (2021).
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Mengyang Xu, Deepu George, Ralph Jimenez, Andrea Markelz, Photonics 8, 302 (2021).
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Witnessing the survival of time-energy entanglement through biological tissue and scattering media
Daniel Lum, Michael Mazurek, Alexander Mikhaylov, Kristen Parzuchowski, Ryan Wilson, Ralph Jimenez, Thomas Gerrits, Martin Stevens, Marcus Cicerone, Charles Camp Jr., Optics Express 12, 3658 (2021).
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Daniel Lum, Michael Mazurek, Alexander Mikhaylov, Kristen Parzuchowski, Ryan Wilson, Ralph Jimenez, Thomas Gerrits, Martin Stevens, Marcus Cicerone, Charles Camp Jr., Optics Express 12, 3658 (2021).
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Setting Bounds on Entangled Two-Photon Absorption Cross Sections in Common Fluorophores
Kristen Parzuchowski, Alexander Mikhaylov, Michael Mazurek, Ryan Wilson, Daniel Lum, Thomas Gerrits, Charles Camp, Martin Stevens, Ralph Jimenez, Physical Review Applied 15, 044012 (2021).
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Kristen Parzuchowski, Alexander Mikhaylov, Michael Mazurek, Ryan Wilson, Daniel Lum, Thomas Gerrits, Charles Camp, Martin Stevens, Ralph Jimenez, Physical Review Applied 15, 044012 (2021).
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2020
Engineering of a brighter variant of the FusionRed fluorescent protein using lifetime flow-cytometry and structure-guided mutations
Srijit Mukherjee, Sheng-Ting Hung, Nancy Douglas, Premashis Manna, Connor Thomas, Annika Ekrem, Amy Palmer, Ralph Jimenez, Biochemistry 59, 3669–3682 (2020).
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Srijit Mukherjee, Sheng-Ting Hung, Nancy Douglas, Premashis Manna, Connor Thomas, Annika Ekrem, Amy Palmer, Ralph Jimenez, Biochemistry 59, 3669–3682 (2020).
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Ultrafast spectroscopy of biliverdin dimethyl ester in solution: pathways of excited-state depopulation
Yangyi Liu, Zhuang Chen, Xueli Wang, Simin Cao, Jianhua Xu, Ralph Jimenez, Jinquan Chen, Physical Chemistry Chemical Physics 22, 19903-19912 (2020).
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Yangyi Liu, Zhuang Chen, Xueli Wang, Simin Cao, Jianhua Xu, Ralph Jimenez, Jinquan Chen, Physical Chemistry Chemical Physics 22, 19903-19912 (2020).
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Setting limits on two-photon absorption cross sections in common fluorescent molecules with entangled photon pairs excitation
Alexander Mikhaylov, Kristen Parzuchowski, Michael Mazurek, Ryan Wilson, Thomas Gerrits, Daniel Lum, Charles Camp, Martin Stevens, Ralph Jimenez, Conference on Lasers and Electro-Optics , JTh3N.4 (2020).
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Alexander Mikhaylov, Kristen Parzuchowski, Michael Mazurek, Ryan Wilson, Thomas Gerrits, Daniel Lum, Charles Camp, Martin Stevens, Ralph Jimenez, Conference on Lasers and Electro-Optics , JTh3N.4 (2020).
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Verifying the Survival of Time-Energy Entanglement Through Tissue
Daniel Lum, Michael Mazurek, Alexander Mikhaylov, Kristen Parzuchowski, Ryan Wilson, Marcus Cicerone, Ralph Jimenez, T. Gerrits, Martin Stevens, Charles Camp, Conference on Lasers and Electro-Optics , (2020).
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Daniel Lum, Michael Mazurek, Alexander Mikhaylov, Kristen Parzuchowski, Ryan Wilson, Marcus Cicerone, Ralph Jimenez, T. Gerrits, Martin Stevens, Charles Camp, Conference on Lasers and Electro-Optics , (2020).
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A comprehensive experimental system for measuring molecular two-photon absorption using an ultrafast entangled photon pair excitation source
Alexander Mikhaylov, Kristen Parzuchowski, Michael Mazurek, Daniel Lum, Thomas Gerrits, Charles Champ, Martin Stevens, Ralph Jimenez, Zameer Hasan, P. Hemmer, Alan Migdall, Advanced Optical Techniques for Quantum Information, Sensing, and Metrology Proceedings of SPIE, 112950Q (2020).
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Alexander Mikhaylov, Kristen Parzuchowski, Michael Mazurek, Daniel Lum, Thomas Gerrits, Charles Champ, Martin Stevens, Ralph Jimenez, Zameer Hasan, P. Hemmer, Alan Migdall, Advanced Optical Techniques for Quantum Information, Sensing, and Metrology Proceedings of SPIE, 112950Q (2020).
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Enrichment of rare events using a multi-parameter high throughput microfluidic droplet sorter
Sheng-Ting Hung, Srijit Mukherjee, Ralph Jimenez, Lab on a Chip 20, 834 (2020).
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Sheng-Ting Hung, Srijit Mukherjee, Ralph Jimenez, Lab on a Chip 20, 834 (2020).
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2019
Erratum: Directed evolution of excited state lifetime and brightness in FusionRed using a microfluidic sorter
Premashis Manna, Sheng-Ting Hung, Srijit Mukherjee, Pia Friis, David Simpson, Maria Lo, Amy Palmer, Ralph Jimenez, Integrative Biology 11, 372-372 (2019).
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Premashis Manna, Sheng-Ting Hung, Srijit Mukherjee, Pia Friis, David Simpson, Maria Lo, Amy Palmer, Ralph Jimenez, Integrative Biology 11, 372-372 (2019).
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Intramolecular Fluorescent Protein Association in a Class of Zinc FRET Sensors Leads to Increased Dynamic Range
Joshua Slocum, Amy Palmer, Ralph Jimenez, The Journal of Physical Chemistry B 123, 3079–3085 (2019).
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Joshua Slocum, Amy Palmer, Ralph Jimenez, The Journal of Physical Chemistry B 123, 3079–3085 (2019).
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Ultrafast internal conversion dynamics of bilirubin bound to UnaG and its N57A mutant
Xiaodan Cao, Changcheng Zhang, Ziheng Gao, Yangyi Liu, Yuzheng Zhao, Yi Yang, Jinquan Chen, Ralph Jimenez, Jianhua Xu, Phys. Chem. Chem. Phys. 21, 2365-2371 (2019).
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Xiaodan Cao, Changcheng Zhang, Ziheng Gao, Yangyi Liu, Yuzheng Zhao, Yi Yang, Jinquan Chen, Ralph Jimenez, Jianhua Xu, Phys. Chem. Chem. Phys. 21, 2365-2371 (2019).
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2018
A multicolor riboswitch-based platform for imaging of RNA in live mammalian cells
Esther Braselmann, Aleksandra Wierzba, Jacob Polaski, Mikołaj Chromiński, Zachariah Holmes, Sheng-Ting Hung, Dilara Batan, Joshua Wheeler, Roy Parker, Ralph Jimenez, Dorota Gryko, Robert Batey, Amy Palmer, Nature Chemical Biology 14, 964-971 (2018).
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Esther Braselmann, Aleksandra Wierzba, Jacob Polaski, Mikołaj Chromiński, Zachariah Holmes, Sheng-Ting Hung, Dilara Batan, Joshua Wheeler, Roy Parker, Ralph Jimenez, Dorota Gryko, Robert Batey, Amy Palmer, Nature Chemical Biology 14, 964-971 (2018).
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Directed evolution of excited state lifetime and brightness in FusionRed using a microfluidic sorter
Premashis Manna, Sheng-Ting Hung, Srijit Mukherjee, Pia Friis, David Simpson, Maria Lo, Amy Palmer, Ralph Jimenez, Integrative Biology 10, 516-526 (2018).
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Premashis Manna, Sheng-Ting Hung, Srijit Mukherjee, Pia Friis, David Simpson, Maria Lo, Amy Palmer, Ralph Jimenez, Integrative Biology 10, 516-526 (2018).
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2017
Critical Comparison of FRET-Sensor Functionality in the Cytosol and Endoplasmic Reticulum and Implications for Quantification of Ions
Kyle Carter, Margaret Carpenter, Brett Fiedler, Ralph Jimenez, Amy Palmer, Analytical Chemistry 89, 9601-9608 (2017).
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Kyle Carter, Margaret Carpenter, Brett Fiedler, Ralph Jimenez, Amy Palmer, Analytical Chemistry 89, 9601-9608 (2017).
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Nondestructive determination of protein structural stability
Mengyang Xu, D. George, Ralph Jimenez, A. Markelz, unknown , (2017).
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Mengyang Xu, D. George, Ralph Jimenez, A. Markelz, unknown , (2017).
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Genetically encoded biosensors for visualizing live-cell biochemical activity at super-resolution
Gary Mo, Brian Ross, Fabian Hertel, Premashis Manna, Xinxing Yang, Eric Greenwald, Chris Booth, Ashlee Plummer, Brian Tenner, Zan Chen, Yuxiao Wang, E. Kennedy, Philip Cole, Karen Fleming, Amy Palmer, Ralph Jimenez, Jie Xiao, Peter Dedecker, Jin Zhang, Nature Methods 14582, 427-434 (2017).
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Gary Mo, Brian Ross, Fabian Hertel, Premashis Manna, Xinxing Yang, Eric Greenwald, Chris Booth, Ashlee Plummer, Brian Tenner, Zan Chen, Yuxiao Wang, E. Kennedy, Philip Cole, Karen Fleming, Amy Palmer, Ralph Jimenez, Jie Xiao, Peter Dedecker, Jin Zhang, Nature Methods 14582, 427-434 (2017).
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Ultrafast Time-Resolved X-ray Absorption Spectroscopy of Ferrioxalate Photolysis with a Laser Plasma X-ray Source and Microcalorimeter Array
Galen O'Neil, Luis Miaja-Avila, Y. Joe, Bradley Alpert, Mahalingam Balasubramanian, D. Sagar, W. Doriese, Joseph Fowler, Wilfred Fullagar, Ning Chen, G. Hilton, Ralph Jimenez, Bruce Ravel, C. Reintsema, Dan Schmidt, Kevin Silverman, Daniel Swetz, J. Uhlig, J. Ullom, The Journal of Physical Chemistry Letters 8, 1099-1104 (2017).
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Galen O'Neil, Luis Miaja-Avila, Y. Joe, Bradley Alpert, Mahalingam Balasubramanian, D. Sagar, W. Doriese, Joseph Fowler, Wilfred Fullagar, Ning Chen, G. Hilton, Ralph Jimenez, Bruce Ravel, C. Reintsema, Dan Schmidt, Kevin Silverman, Daniel Swetz, J. Uhlig, J. Ullom, The Journal of Physical Chemistry Letters 8, 1099-1104 (2017).
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2016
Droplet Microfluidic Flow Cytometer for Sorting on Transient Cellular Responses of Genetically-Encoded Sensors
Brett Fiedler, Steven van Buskirk, Kyle Carter, Yan Qin, Margaret Carpenter, Amy Palmer, Ralph Jimenez, Analytical Chemistry , (2016).
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Brett Fiedler, Steven van Buskirk, Kyle Carter, Yan Qin, Margaret Carpenter, Amy Palmer, Ralph Jimenez, Analytical Chemistry , (2016).
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Microfluidic System for In-Flow Reversible Photoswitching of Near-Infrared Fluorescent Proteins
Vladislav Lychagov, Anton Shemetov, Ralph Jimenez, Vladislav Verkhusha, Analytical Chemistry 88, 11821-11829 (2016).
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Vladislav Lychagov, Anton Shemetov, Ralph Jimenez, Vladislav Verkhusha, Analytical Chemistry 88, 11821-11829 (2016).
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Ultrafast Time-Resolved Hard X-Ray Emission Spectroscopy on a Tabletop
Luis Miaja-Avila, Galen textquoterightNeil, Y. Joe, Bradley Alpert, Niels Damrauer, W. Doriese, Steven Fatur, Joseph Fowler, G. Hilton, Ralph Jimenez, C. Reintsema, Daniel Schmidt, Kevin Silverman, Daniel Swetz, Hideyuki Tatsuno, J. Ullom, Physical Review X 6, (2016).
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Luis Miaja-Avila, Galen textquoterightNeil, Y. Joe, Bradley Alpert, Niels Damrauer, W. Doriese, Steven Fatur, Joseph Fowler, G. Hilton, Ralph Jimenez, C. Reintsema, Daniel Schmidt, Kevin Silverman, Daniel Swetz, Hideyuki Tatsuno, J. Ullom, Physical Review X 6, (2016).
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Fluorescence from Multiple Chromophore Hydrogen-Bonding States in the Far-Red Protein TagRFP675
Patrick Konold, Eunjin Yoon, Junghwa Lee, Samantha Allen, Prem Chapagain, Bernard Gerstman, Chola Regmi, Kiryl Piatkevich, Vladislav Verkhusha, Taiha Joo, Ralph Jimenez, The Journal of Physical Chemistry Letters 7, 3046-3051 (2016).
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Patrick Konold, Eunjin Yoon, Junghwa Lee, Samantha Allen, Prem Chapagain, Bernard Gerstman, Chola Regmi, Kiryl Piatkevich, Vladislav Verkhusha, Taiha Joo, Ralph Jimenez, The Journal of Physical Chemistry Letters 7, 3046-3051 (2016).
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Far-Red Emission of mPlum Fluorescent Protein Results from Excited-State Interconversion between Chromophore Hydrogen-Bonding States
Eunjin Yoon, Patrick Konold, Junghwa Lee, Taiha Joo, Ralph Jimenez, The Journal of Physical Chemistry Letters 7, 2170-2174 (2016).
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Eunjin Yoon, Patrick Konold, Junghwa Lee, Taiha Joo, Ralph Jimenez, The Journal of Physical Chemistry Letters 7, 2170-2174 (2016).
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Using Pyridinium Styryl Dyes as the Standards of Time-Resolved Instrument Response
L. Li, M. Chang, H. Yi, M. Jia, X. Cao, Z. Zhou, S. Zhang, H. Pan, C.-W. Shih, Ralph Jimenez, J. Xu, Applied Spectroscopy 70, 1195-1201 (2016).
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L. Li, M. Chang, H. Yi, M. Jia, X. Cao, Z. Zhou, S. Zhang, H. Pan, C.-W. Shih, Ralph Jimenez, J. Xu, Applied Spectroscopy 70, 1195-1201 (2016).
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Dark State Dynamics of Red Fluorescent Proteins in the Cell Environment Measured in Microfluidic Flow
Premashis Manna, Felix Vietmeyer, Ralph Jimenez, Biophysical Journal 110, 492a - 493a (2016).
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Premashis Manna, Felix Vietmeyer, Ralph Jimenez, Biophysical Journal 110, 492a - 493a (2016).
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Multi-Parametric Microfluidic Screening and Sorting for Simultaneous Evolution of Photophysical Parameters of Fluorescent Proteins
Felix Vietmeyer, Premashis Manna, Pia Friis, Amy Palmer, Ralph Jimenez, Biophysical Journal 110, 166a (2016).
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Felix Vietmeyer, Premashis Manna, Pia Friis, Amy Palmer, Ralph Jimenez, Biophysical Journal 110, 166a (2016).
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2015
Femtosecond Measurements Of Size-Dependent Spin Crossover In FeII(pyz)Pt(CN)4 Nanocrystals
D. Sagar, Frederick Baddour, Patrick Konold, J. Ullom, Daniel Ruddy, Justin Johnson, Ralph Jimenez, The Journal of Physical Chemistry Letters 7, 148-153 (2015).
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D. Sagar, Frederick Baddour, Patrick Konold, J. Ullom, Daniel Ruddy, Justin Johnson, Ralph Jimenez, The Journal of Physical Chemistry Letters 7, 148-153 (2015).
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Observation of iron spin-states using tabletop x-ray emission spectroscopy and microcalorimeter sensors
Y. Joe, Galen O'Neil, Luis Miaja-Avila, J. Fowler, Ralph Jimenez, K. Silverman, D. Swetz, J. Ullom, Journal of Physics B: Atomic, Molecular and Optical Physics 49, 024003 (2015).
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Y. Joe, Galen O'Neil, Luis Miaja-Avila, J. Fowler, Ralph Jimenez, K. Silverman, D. Swetz, J. Ullom, Journal of Physics B: Atomic, Molecular and Optical Physics 49, 024003 (2015).
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High-Speed Multiparameter Photophysical Analyses of Fluorophore Libraries
Kevin Dean, Lloyd Davis, Jennifer Lubbeck, Premashis Manna, Pia Friis, Amy Palmer, Ralph Jimenez, Analytical Chemistry , 150429131032000 (2015).
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Kevin Dean, Lloyd Davis, Jennifer Lubbeck, Premashis Manna, Pia Friis, Amy Palmer, Ralph Jimenez, Analytical Chemistry , 150429131032000 (2015).
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Laser plasma x-ray source for ultrafast time-resolved x-ray absorption spectroscopy
Luis Miaja-Avila, Galen O'Neil, J. Uhlig, C. Cromer, M. Dowell, Ralph Jimenez, A. Hoover, K. Silverman, J. Ullom, Structural Dynamics 2, 024301 (2015).
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Luis Miaja-Avila, Galen O'Neil, J. Uhlig, C. Cromer, M. Dowell, Ralph Jimenez, A. Hoover, K. Silverman, J. Ullom, Structural Dynamics 2, 024301 (2015).
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Time and Frequency-domain Measurement of Ground State Recovery Times in Red Fluorescent Proteins
Premashis Manna, Ralph Jimenez, The Journal of Physical Chemistry B , 150317145315006 (2015).
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Premashis Manna, Ralph Jimenez, The Journal of Physical Chemistry B , 150317145315006 (2015).
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Excited State Electronic Landscape of mPlum Revealed by Two-Dimensional Double Quantum Coherence Spectroscopy
Patrick Konold, Ralph Jimenez, The Journal of Physical Chemistry B 119, 3414-3422 (2015).
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Patrick Konold, Ralph Jimenez, The Journal of Physical Chemistry B 119, 3414-3422 (2015).
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2014
Microfluidics-based selection of red-fluorescent proteins with decreased rates of photobleaching
Kevin Dean, Jennifer Lubbeck, Lloyd Davis, Chola Regmi, Prem Chapagain, Bernard Gerstman, Ralph Jimenez, Amy Palmer, Integative Biology , (2014).
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Kevin Dean, Jennifer Lubbeck, Lloyd Davis, Chola Regmi, Prem Chapagain, Bernard Gerstman, Ralph Jimenez, Amy Palmer, Integative Biology , (2014).
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Hydrogen Bond Flexibility Correlates with Stokes Shift in mPlum Variants
Patrick Konold, Chola Regmi, Prem Chapagain, Bernard Gerstman, Ralph Jimenez, The Journal of Physical Chemistry B 118, 2940-2948 (2014).
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Patrick Konold, Chola Regmi, Prem Chapagain, Bernard Gerstman, Ralph Jimenez, The Journal of Physical Chemistry B 118, 2940-2948 (2014).
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2013
Microfluidic cell sorter for use in developing red fluorescent proteins with improved photostability
Lloyd Davis, Jennifer Lubbeck, Kevin Dean, Amy Palmer, Ralph Jimenez, Lab on a Chip 13, 2320 (2013).
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Lloyd Davis, Jennifer Lubbeck, Kevin Dean, Amy Palmer, Ralph Jimenez, Lab on a Chip 13, 2320 (2013).
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Microfluidic cytometer for high-throughput measurement of photosynthetic characteristics and lipid accumulation in individual algal cells
R. Erickson, Ralph Jimenez, Lab on a Chip 13, 2893 (2013).
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R. Erickson, Ralph Jimenez, Lab on a Chip 13, 2893 (2013).
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2012
High-Throughput Examination of Fluorescence Resonance Energy Transfer-Detected Metal-Ion Response in Mammalian Cells
Hairong Ma, Emily Gibson, Philip Dittmer, Ralph Jimenez, Amy Palmer, Journal of the American Chemical Society 134, 2488-2491 (2012).
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Hairong Ma, Emily Gibson, Philip Dittmer, Ralph Jimenez, Amy Palmer, Journal of the American Chemical Society 134, 2488-2491 (2012).
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Pressure Induced Changes in the Fluorescence Behavior of Red Fluorescent Proteins
E. Pozzi, L. Schwall, Ralph Jimenez, J. Mathias Weber, The Journal of Physical Chemistry B 116, 10311-10316 (2012).
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E. Pozzi, L. Schwall, Ralph Jimenez, J. Mathias Weber, The Journal of Physical Chemistry B 116, 10311-10316 (2012).
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Microfluidic Flow Cytometer for Quantifying Photobleaching of Fluorescent Proteins in Cells
Jennifer Lubbeck, Kevin Dean, Hairong Ma, Amy Palmer, Ralph Jimenez, Analytical Chemistry 84, 3929-3937 (2012).
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Jennifer Lubbeck, Kevin Dean, Hairong Ma, Amy Palmer, Ralph Jimenez, Analytical Chemistry 84, 3929-3937 (2012).
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Heterogeneity and Kinetics of FRET-Based Ca2+ and Zn2+ Sensors in HeLa~Cells
Hairong Ma, Emily Gibson, Philip Dittmer, Kevin Dean, Amy Palmer, Ralph Jimenez, Biophysical Journal 102, 209a (2012).
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Hairong Ma, Emily Gibson, Philip Dittmer, Kevin Dean, Amy Palmer, Ralph Jimenez, Biophysical Journal 102, 209a (2012).
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Microfluidic Cytometer For Simultaneous High-Throughput Screening of Fluorescent Proteins on the Basis of Fluorescence Lifetime, Photostability, and Brightness
Jennifer Lubbeck, Kevin Dean, Lloyd Davis, Amy Palmer, Ralph Jimenez, Biophysical Journal 102, 208a - 209a (2012).
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Jennifer Lubbeck, Kevin Dean, Lloyd Davis, Amy Palmer, Ralph Jimenez, Biophysical Journal 102, 208a - 209a (2012).
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Real-time analysis of multi-laser-beam fluorescence for timed control of laser tweezers in a microfluidic cell-sorting device
Lloyd Davis, Jennifer Lubbeck, Kevin Dean, Amy Palmer, Ralph Jimenez, unknown , (2012).
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Lloyd Davis, Jennifer Lubbeck, Kevin Dean, Amy Palmer, Ralph Jimenez, unknown , (2012).
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2011
Analysis of Red-Fluorescent Proteins Provides Insight into Dark-State Conversion and Photodegradation
Kevin Dean, Jennifer Lubbeck, J. Binder, L. Schwall, Ralph Jimenez, Amy Palmer, Biophysical Journal 101, 961-969 (2011).
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Kevin Dean, Jennifer Lubbeck, J. Binder, L. Schwall, Ralph Jimenez, Amy Palmer, Biophysical Journal 101, 961-969 (2011).
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A Microfluidic Cell Sorter for Directed Evolution of Fluorescent Proteins Based on Dark-State Conversion and Photobleaching
Jennifer Lubbeck, Kevin Dean, Lloyd Davis, Amy Palmer, Ralph Jimenez, Biophysical Journal 100, 175a (2011).
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Jennifer Lubbeck, Kevin Dean, Lloyd Davis, Amy Palmer, Ralph Jimenez, Biophysical Journal 100, 175a (2011).
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High-Throughput Cell Elastic Modulus Cytometry using Single Diode Laser Bar Optical Stretchers
Ihab Sraj, Justin Chichester, Erich Hoover, Ralph Jimenez, Jeff Squier, Charles Eggleton, David Marr, Biophysical Journal 100, 191a (2011).
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Ihab Sraj, Justin Chichester, Erich Hoover, Ralph Jimenez, Jeff Squier, Charles Eggleton, David Marr, Biophysical Journal 100, 191a (2011).
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High-Throughput Screening of Response Kinetics of Genetically-Encoded Metal Sensors with Microfluidics Technology
Hairong Ma, Philip Dittmer, Amy Palmer, Ralph Jimenez, Biophysical Journal 100, 316a (2011).
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Hairong Ma, Philip Dittmer, Amy Palmer, Ralph Jimenez, Biophysical Journal 100, 316a (2011).
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3D optical trapping calibration and optical micromanipulation using 808-nm diode-laser bar
Mariana Potcoava, Leo Krzewina, Erich Hoover, Myung Kim, Jeff Squier, David Marr, Ralph Jimenez, unknown , (2011).
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Mariana Potcoava, Leo Krzewina, Erich Hoover, Myung Kim, Jeff Squier, David Marr, Ralph Jimenez, unknown , (2011).
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Dynamics of optically trapped red blood cells by phase contrast microscopy
Mariana Potcoava, Erich Hoover, K. Roth, Gianna Riccota, Jeff Squier, Ralph Jimenez, David Marr, unknown , (2011).
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Mariana Potcoava, Erich Hoover, K. Roth, Gianna Riccota, Jeff Squier, Ralph Jimenez, David Marr, unknown , (2011).
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2010
Cell deformation cytometry using diode-bar optical stretchers
Ihab Sraj, Charles Eggleton, Ralph Jimenez, Erich Hoover, Jeff Squier, Justin Chichester, David Marr, Journal of Biomedical Optics 15, 047010 (2010).
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Ihab Sraj, Charles Eggleton, Ralph Jimenez, Erich Hoover, Jeff Squier, Justin Chichester, David Marr, Journal of Biomedical Optics 15, 047010 (2010).
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Distinguishing between Two and Three-State Equilibrium Folding with Three-Pulse Photon Echo Peak Shift (3PEPS) Spectroscopy
Zhaochuan Shen, Emily Gibson, Ralph Jimenez, unknown , (2010).
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Zhaochuan Shen, Emily Gibson, Ralph Jimenez, unknown , (2010).
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2009
Three-pulse photon echo spectroscopy as a probe of flexibility and conformational heterogeneity in protein folding
Emily Gibson, Ralph Jimenez, unknown , (2009).
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Emily Gibson, Ralph Jimenez, unknown , (2009).
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Three-pulse photon echo spectroscopy as a probe of flexibility and conformational heterogeneity in protein folding
Emily Gibson, Z. Shen, Ralph Jimenez, Chem. Phys. Lett. 473, 330-335 (2009).
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Emily Gibson, Z. Shen, Ralph Jimenez, Chem. Phys. Lett. 473, 330-335 (2009).
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Microfluidic cell counter with embedded optical fibers fabricated by femtosecond laser ablation and anodic bonding
D. Schafer, Emily Gibson, E. Salim, Amy Palmer, Ralph Jimenez, Jeff Squier, Opt. Express 17, (2009).
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D. Schafer, Emily Gibson, E. Salim, Amy Palmer, Ralph Jimenez, Jeff Squier, Opt. Express 17, (2009).
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2008
Linear spatio-temporal characterization of a UV microscope objective for nonlinear imaging and spectroscopy by using two-dimensional spectra interferometry
W. Amir, Charles Durfee, D. Schafer, Emily Gibson, Kost Przekwas, Ralph Jimenez, Jeff Squier, Journal of Microscopy 230, (2008).
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W. Amir, Charles Durfee, D. Schafer, Emily Gibson, Kost Przekwas, Ralph Jimenez, Jeff Squier, Journal of Microscopy 230, (2008).
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Mass Instability in Isolated Recombinant FixL Heme Domains of Bradyrhizobium japonicum
J. Satterlee, C. Suquet, A. Bidwai, J. Erman, L. Schwall, Ralph Jimenez, Biochemistry 47, 1540-1553 (2008).
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J. Satterlee, C. Suquet, A. Bidwai, J. Erman, L. Schwall, Ralph Jimenez, Biochemistry 47, 1540-1553 (2008).
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2007
Three-dimensional chemical concentration maps in a microfluidic device using two-photon absorption fluorescence imaging
D. Schafer, Emily Gibson, R. Erikson, J. Lawrence, T. Vestad, Jeff Squier, Ralph Jimenez, David Marr, Optics Letters 32, 2568-2570 (2007).
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D. Schafer, Emily Gibson, R. Erikson, J. Lawrence, T. Vestad, Jeff Squier, Ralph Jimenez, David Marr, Optics Letters 32, 2568-2570 (2007).
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A Novel Fast-mixing Microfluidic Device for Studying Nonequilibrium Systems using Femtosecond Spectroscopies
Emily Gibson, D. Schafer, W. Amir, David Marr, Jeff Squier, Ralph Jimenez, 88, 172-174 (2007).
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Emily Gibson, D. Schafer, W. Amir, David Marr, Jeff Squier, Ralph Jimenez, 88, 172-174 (2007).
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Design and Fabrication of Efficient Reflection Grisms for Pulse Compression and Dispersion Compensation
Emily Gibson, Henry Kapteyn, D. Gaudiosi, Ralph Jimenez, S. Kane, Fred Tortajada, Herb Dinger, B. Touzet, R. Huff, Jeff Squier, Charles Durfee, 88, 169-171 (2007).
View Record | DOI
Emily Gibson, Henry Kapteyn, D. Gaudiosi, Ralph Jimenez, S. Kane, Fred Tortajada, Herb Dinger, B. Touzet, R. Huff, Jeff Squier, Charles Durfee, 88, 169-171 (2007).
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Grism based stretcher/compressor system for amplified, femtosecond kilohertz lasers
D. Gaudiosi, Emily Gibson, S. Kane, R. Huff, Margaret Murnane, Henry Kapteyn, Charles Durfee, Jeff Squier, Ralph Jimenez, 88, 95-97 (2007).
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D. Gaudiosi, Emily Gibson, S. Kane, R. Huff, Margaret Murnane, Henry Kapteyn, Charles Durfee, Jeff Squier, Ralph Jimenez, 88, 95-97 (2007).
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Reflection grisms compensate dispersion in ultrafast systems
S. Kane, Jeff Squier, Ralph Jimenez, L. Kuznetsova, F. Wise, Henry Kapteyn, B. Touzet, Laser Focus World 43, 95-98 (2007).
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S. Kane, Jeff Squier, Ralph Jimenez, L. Kuznetsova, F. Wise, Henry Kapteyn, B. Touzet, Laser Focus World 43, 95-98 (2007).
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2006
Efficient reflection grisms for pulse compression and dispersion compensation of femtosecond pulses
Emily Gibson, D. Gaudiosi, Henry Kapteyn, Ralph Jimenez, S. Kane, R. Huff, Charles Durfee, Jeff Squier, Optics Letters 31, 3363 (2006).
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Emily Gibson, D. Gaudiosi, Henry Kapteyn, Ralph Jimenez, S. Kane, R. Huff, Charles Durfee, Jeff Squier, Optics Letters 31, 3363 (2006).
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Multi-kilohertz repetition rate Ti:sapphire amplifier based on down-chirped pulse amplification
D. Gaudiosi, E. Gagnon, A. Lytle, Julie Fiore, Emily Gibson, S. Kane, Jeff Squier, Margaret Murnane, Henry Kapteyn, Ralph Jimenez, Sterling Backus, Optics Express 14, 9277-9283 (2006).
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D. Gaudiosi, E. Gagnon, A. Lytle, Julie Fiore, Emily Gibson, S. Kane, Jeff Squier, Margaret Murnane, Henry Kapteyn, Ralph Jimenez, Sterling Backus, Optics Express 14, 9277-9283 (2006).
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Grism based stretcher/compressor system for amplified femtosecond kilohertz lasers
Emily Gibson, S. Kane, R. Huff, D. Gaudiosi, Henry Kapteyn, Charles Durfee, Jeff Squier, Ralph Jimenez, Conference on Lasers and Electro-Optics/Quantum Electronics and Laser Science Conference and Photonic Applications Systems Technologies , (2006).
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Emily Gibson, S. Kane, R. Huff, D. Gaudiosi, Henry Kapteyn, Charles Durfee, Jeff Squier, Ralph Jimenez, Conference on Lasers and Electro-Optics/Quantum Electronics and Laser Science Conference and Photonic Applications Systems Technologies , (2006).
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Photon echo spectroscopy of porphyrins and heme proteins: effects of quasidegenerate electronic structure on the peak shift decay
B. Cho, C. Carlsson, Ralph Jimenez, The Journal of Chemical Physics 124, 144905 (2006).
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B. Cho, C. Carlsson, Ralph Jimenez, The Journal of Chemical Physics 124, 144905 (2006).
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2005
Hydrodynamic focusing for vacuum-pumped microfluidics
T. Stiles, R. Fallon, T. Vestad, J. Oakey, David Marr, Jeff Squier, Ralph Jimenez, Microfluidics and Nanofluidics 1, 280-283 (2005).
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T. Stiles, R. Fallon, T. Vestad, J. Oakey, David Marr, Jeff Squier, Ralph Jimenez, Microfluidics and Nanofluidics 1, 280-283 (2005).
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2004
Protein dynamics and the immunological evolution of molecular recognition
Ralph Jimenez, Proceedings of the National Academy of Sciences 101, 3803-3808 (2004).
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Ralph Jimenez, Proceedings of the National Academy of Sciences 101, 3803-3808 (2004).
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